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Now in any religious community the majority are likley to be of Moderate Faith or Dedicated faith. If the majority of the country fits into one of these catagories policies and laws will come into lace not based on logic but based upon religious doctrine. This would not be the case if they were not. The Danger surrounding those of moderate faith is that a lot of the time they are a high majority or voting demoraphic, or in some csaes simply in charge.
This isn't a problem with faith, or with moderation. It's a problem with democracy--sometimes the people in the majority support things you don't. This can happen whether they're people of moderate faith, extreme faith, or not faith at all. This didn't happen because they were moderates rather than extremists, it happened because they were in the majority. I feel like you're treating one thing that happens to be true like it's the cause of something you don't like, when rather it's just an unrelated fact, and the cause is something entirely different.
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We can see evidence of how this comes into practice in the news nearly everyday. One example off the top of my head is the proganda films and books against Dungeons Rock music. Huge community protests went on and bands were forced into trials to prove they werent trying to corrupt the youth of yesterday. There is no reasoniung for this to happen other than religious backlash by the majority of those of moderate faith. The danger is that these things spread into more important issues such as Education (although it can easily be argued that the prohibitation of teaching Evolution in some american Schools is Evidence of this) or crime policy, even what scientif reaserch is and isn;t allowed (e.g Stem Cells). While Morality needs to play a part in this religious morality shouldnt but while the masses gain their morality from their faith it will allways intervene.
Again, this doesn't have anything to do with moderate vs. extreme views, it has to do with people being in the majority that you (and I, for what its worth) disagree with. What you describe could just as well happen if everyone was an atheist, or a buddhist, or a muslim, or if no faith had any significant clout at all. Religions are just one of the many ways people can make bad decisions as a group (or as individuals).
Really, I think the only real 'solution' to the problem you point out is for you to be an absolute ruler, and always get your way. Of course, then other people will be not getting their way, so it doesn't really solve 'the' problem, just 'your' problem, as it were. If you let other people be part of the decision-making process, you sort of have to accept that sometimes (perhaps even most of the time) they'll make decisions you disagree with.