Information Dumps
I know I shepherded Brent and company to the ARG facility, but the next moves are entirely up to you. I've provided some information, and the facility's computer will answer your questions, but it's not terribly imaginative for all of its intelligence. It really does need a human to direct anything more than maintenance operations and self defense by hiding.
There are other things happening elsewhere, of course, but Brent and Joxe are still in charge of their own destinies. Any direction they choose will certainly encounter challenges, but they are still their own people.